Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose-phosphate diphosphokinase | SGRAN_RS02965 | Not Available | Positive | 630207 - 631124 | 32782.4 |
| universal stress protein | SGRAN_RS23225 | Not Available | Positive | 631682 - 631996 | 10737.0 |
| had-ic family p-type atpase | SGRAN_RS02975 | Not Available | Positive | 632117 - 634822 | 96913.7 |
| universal stress protein | SGRAN_RS02980 | Not Available | Positive | 634819 - 635730 | 32907.8 |
| calcium/sodium antiporter | SGRAN_RS02985 | Not Available | Positive | 635727 - 636695 | 33767.5 |
| 1-phosphofructokinase family hexose kinase | SGRAN_RS02990 | Not Available | Positive | 636942 - 637874 | 33227.8 |
| carboxymuconolactone decarboxylase family protein | SGRAN_RS02995 | Not Available | Negative | 637999 - 638352 | 12411.1 |
| tolc family outer membrane protein | SGRAN_RS03000 | Not Available | Negative | 638370 - 639635 | 43753.9 |
| duf2892 domain-containing protein | SGRAN_RS03005 | Not Available | Negative | 639632 - 639835 | 7122.02 |
| nad(p)/fad-dependent oxidoreductase | SGRAN_RS03010 | Not Available | Negative | 639876 - 641156 | 46118.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.