Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
copper resistance protein copcSGRAN_RS22865Not AvailableNegative11541 - 1184010642.0
fecr domain-containing proteinSGRAN_RS00040Not AvailableNegative11894 - 1290736254.6
rna polymerase sigma factorSGRAN_RS23105Not AvailableNegative12904 - 1369829790.3
gntr family transcriptional regulatorSGRAN_RS00050Not AvailableNegative13764 - 1436021465.5
phytanoyl-coa dioxygenase family proteinSGRAN_RS00055Not AvailableNegative14357 - 1522330880.7
acyl-homoserine-lactone synthaseSGRAN_RS00060Not AvailableNegative15220 - 1584622780.1
helix-turn-helix domain-containing proteinSGRAN_RS00065Not AvailableNegative15993 - 1640915170.3
mercuric transporter mert family proteinSGRAN_RS00070Not AvailablePositive16487 - 1683711874.0
gdccvxc domain-containing (seleno)proteinSGRAN_RS00075Not AvailablePositive16830 - 170547815.26
luxr family transcriptional regulatorSGRAN_RS00080Not AvailableNegative17136 - 1787027011.3

Displaying genes 51 – 60 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.