Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enoyl-coa hydratase/isomerase family protein | SGRAN_RS02575 | Not Available | Positive | 547223 - 547999 | 26650.8 |
| maoc family dehydratase | SGRAN_RS02580 | Not Available | Positive | 548025 - 548477 | 16379.8 |
| coa ester lyase | SGRAN_RS02585 | Not Available | Positive | 548474 - 549358 | 30761.0 |
| coniferyl aldehyde dehydrogenase | SGRAN_RS02590 | Not Available | Positive | 549355 - 550770 | 51004.0 |
| hypothetical protein | SGRAN_RS02595 | Not Available | Positive | 550787 - 551590 | 29056.7 |
| epoxide hydrolase family protein | SGRAN_RS02600 | Not Available | Positive | 551602 - 552756 | 43523.7 |
| tonb-dependent receptor | SGRAN_RS02605 | Not Available | Positive | 552995 - 555370 | 86364.5 |
| is21 family transposase | SGRAN_RS02610 | Not Available | Positive | 555704 - 557194 | 56602.2 |
| is21-like element helper atpase istb | SGRAN_RS02615 | Not Available | Positive | 557191 - 557958 | 28708.1 |
| hypothetical protein | SGRAN_RS02620 | Not Available | Negative | 557998 - 558381 | 14356.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.