Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virb4 family type iv secretion/conjugal transfer atpaseSGRAN_RS02425Not AvailableNegative517243 - 51961287352.1
type iv secretion system protein virb3SGRAN_RS02430Not AvailableNegative519591 - 51987510873.5
trbc/virb2 family proteinSGRAN_RS02435Not AvailableNegative519879 - 52020810954.6
trbc/virb2 family proteinSGRAN_RS21445Not AvailablePositive520403 - 52076812128.9
copper resistance protein copcSGRAN_RS21450Not AvailableNegative520786 - 52143223940.8
efflux transporter outer membrane subunitSGRAN_RS02450Not AvailableNegative522222 - 52364349559.0
hlyd family secretion proteinSGRAN_RS02455Not AvailableNegative523646 - 52455433162.6
duf1656 domain-containing proteinSGRAN_RS02460Not AvailableNegative524565 - 5247777569.63
fusc family proteinSGRAN_RS02465Not AvailableNegative524774 - 52675671174.1
marr family winged helix-turn-helix transcriptional regulatorSGRAN_RS02470Not AvailableNegative526753 - 52723517716.4

Displaying genes 541 – 550 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.