Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| calx-beta domain-containing protein | SGRAN_RS02380 | Not Available | Negative | 505408 - 506016 | 20632.4 |
| hypothetical protein | SGRAN_RS02385 | Not Available | Positive | 506368 - 506964 | 22148.7 |
| ig-like domain-containing protein | SGRAN_RS02390 | Not Available | Positive | 507226 - 507792 | 18614.6 |
| rhs repeat domain-containing protein | SGRAN_RS02395 | Not Available | Positive | 507835 - 512004 | 148047.0 |
| hypothetical protein | SGRAN_RS22070 | Not Available | Positive | 511962 - 512396 | 16204.6 |
| p-type dna transfer atpase virb11 | SGRAN_RS02400 | Not Available | Negative | 512436 - 513437 | 35501.1 |
| trbi/virb10 family protein | SGRAN_RS02405 | Not Available | Negative | 513434 - 514534 | 37466.9 |
| trbg/virb9 family p-type conjugative transfer protein | SGRAN_RS02410 | Not Available | Negative | 514531 - 515247 | 26032.1 |
| virb8 family protein | SGRAN_RS02415 | Not Available | Negative | 515244 - 516026 | 28596.2 |
| type iv secretion system protein | SGRAN_RS02420 | Not Available | Negative | 516023 - 517243 | 42111.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.