Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attr | Not Available | Not Available | Positive | 2009497 - 2009545 | Not Available |
| Site-specific recombinase for integration and excision | SGRAN_RS09270 | Not Available | Negative | 2009500 - 2011173 | 62713.2 |
| site-specific integrase | SGRAN_RS00005 | Not Available | Negative | 290 - 1663 | 50645.8 |
| tetratricopeptide repeat protein | SGRAN_RS00010 | Not Available | Negative | 1896 - 2861 | 35628.2 |
| hypothetical protein | SGRAN_RS00015 | Not Available | Positive | 3290 - 3931 | 24336.8 |
| benenodin family lasso peptide | SGRAN_RS22020 | Not Available | Positive | 4500 - 4643 | 5188.97 |
| lasso peptide biosynthesis b2 protein | SGRAN_RS00020 | Not Available | Positive | 4708 - 5349 | 23192.1 |
| asparagine synthase c-terminal domain-containing protein | SGRAN_RS00025 | Not Available | Positive | 5472 - 7079 | 58257.9 |
| prolyl oligopeptidase family serine peptidase | SGRAN_RS00030 | Not Available | Negative | 7069 - 9255 | 79248.1 |
| tonb-dependent siderophore receptor | SGRAN_RS00035 | Not Available | Negative | 9266 - 11206 | 69096.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.