Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | SGRAN_RS02035 | Not Available | Negative | 421202 - 423745 | 92695.7 |
| hypothetical protein | SGRAN_RS02040 | Not Available | Positive | 423852 - 424301 | 15251.4 |
| hypothetical protein | SGRAN_RS02045 | Not Available | Negative | 424913 - 425413 | 17017.4 |
| nitroreductase | SGRAN_RS02050 | Not Available | Negative | 425410 - 426111 | 25692.7 |
| rdd family protein | SGRAN_RS02055 | Not Available | Negative | 426098 - 426952 | 31884.4 |
| stage ii sporulation protein m | SGRAN_RS02060 | Not Available | Negative | 426949 - 427995 | 38258.7 |
| duf58 domain-containing protein | SGRAN_RS02065 | Not Available | Negative | 427995 - 429320 | 47877.5 |
| moxr family atpase | SGRAN_RS02070 | Not Available | Negative | 429317 - 430282 | 34292.3 |
| duf4350 domain-containing protein | SGRAN_RS02075 | Not Available | Negative | 430272 - 431501 | 43371.2 |
| duf4129 domain-containing protein | SGRAN_RS02080 | Not Available | Negative | 431498 - 432196 | 24355.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.