Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-type conjugative transfer protein trbl | SGRAN_RS21330 | Not Available | Positive | 4669939 - 4671318 | 45164.1 |
| conjugal transfer protein trbf | SGRAN_RS21335 | Not Available | Positive | 4671325 - 4672008 | 25344.1 |
| p-type conjugative transfer protein trbg | SGRAN_RS21340 | Not Available | Positive | 4672005 - 4673033 | 37028.1 |
| trbi/virb10 family protein | SGRAN_RS21345 | Not Available | Positive | 4673030 - 4674322 | 44597.6 |
| duf2274 domain-containing protein | SGRAN_RS21350 | Not Available | Positive | 4674319 - 4674540 | 8134.02 |
| hypothetical protein | SGRAN_RS21355 | Not Available | Negative | 4674602 - 4674904 | 10462.8 |
| lysr family transcriptional regulator | SGRAN_RS22010 | Not Available | Negative | 4674891 - 4675943 | 38979.3 |
| hypothetical protein | SGRAN_RS21370 | Not Available | Negative | 4676434 - 4677420 | 36411.5 |
| mucr family transcriptional regulator | SGRAN_RS22015 | Not Available | Negative | 4677560 - 4678099 | 18930.1 |
| abortive infection family protein | SGRAN_RS21375 | Not Available | Negative | 4678298 - 4679194 | 32141.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.