Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
6,7-dimethyl-8-ribityllumazine synthaseSGRAN_RS01885Not AvailableNegative385465 - 38589014727.7
3,4-dihydroxy-2-butanone-4-phosphate synthaseSGRAN_RS01890Not AvailableNegative385890 - 38716745612.7
ankyrin repeat domain-containing proteinSGRAN_RS01895Not AvailableNegative387424 - 38804422180.5
sco family proteinSGRAN_RS01900Not AvailablePositive388131 - 38877522939.7
ycgn family cysteine cluster proteinSGRAN_RS01905Not AvailablePositive388763 - 38920916702.8
m48 family metallopeptidaseSGRAN_RS01910Not AvailablePositive389190 - 38991826671.1
transglycosylase domain-containing proteinSGRAN_RS01915Not AvailableNegative389989 - 39219978330.3
peptide-methionine (r)-s-oxide reductase msrbSGRAN_RS01920Not AvailableNegative392291 - 39269214295.5
duf4402 domain-containing proteinSGRAN_RS01925Not AvailablePositive392854 - 39337217644.4
peroxiredoxinSGRAN_RS01930Not AvailableNegative393416 - 39405423604.9

Displaying genes 431 – 440 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.