Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3363 domain-containing proteinSGRAN_RS21280Not AvailablePositive4659205 - 466095964152.0
hypothetical proteinSGRAN_RS21285Not AvailablePositive4661023 - 466195233855.2
conjugal transfer protein tragSGRAN_RS21290Not AvailablePositive4662081 - 466409974100.7
copg family transcriptional regulatorSGRAN_RS21295Not AvailablePositive4664115 - 466455216291.3
p-type conjugative transfer atpase trbbSGRAN_RS21300Not AvailablePositive4664741 - 466571233884.0
trbc/virb2 family proteinSGRAN_RS21305Not AvailablePositive4665757 - 466606810476.0
virb3 family type iv secretion system proteinSGRAN_RS21310Not AvailablePositive4666068 - 46663379436.66
conjugal transfer protein trbeSGRAN_RS21315Not AvailablePositive4666350 - 466878589020.3
p-type conjugative transfer protein trbjSGRAN_RS21320Not AvailablePositive4668782 - 466950425704.3
putative entry exclusion protein trbk-altSGRAN_RS21325Not AvailablePositive4669545 - 466993713646.9

Displaying genes 4381 – 4390 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.