Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator domain-containing protein | SGRAN_RS22000 | Not Available | Positive | 4653668 - 4653865 | 8145.91 |
| duf2285 domain-containing protein | SGRAN_RS21240 | Not Available | Positive | 4653954 - 4654448 | 18591.6 |
| alpa family transcriptional regulator | SGRAN_RS22005 | Not Available | Positive | 4654564 - 4654851 | 10470.3 |
| replication initiator protein a | SGRAN_RS21245 | Not Available | Positive | 4654858 - 4655973 | 42056.2 |
| para family partition atpase | SGRAN_RS21250 | Not Available | Positive | 4655970 - 4656608 | 23003.9 |
| hypothetical protein | SGRAN_RS21255 | Not Available | Positive | 4656605 - 4656862 | 9078.77 |
| duf2840 domain-containing protein | SGRAN_RS21260 | Not Available | Positive | 4656859 - 4657338 | 18525.1 |
| s26 family signal peptidase | SGRAN_RS21265 | Not Available | Positive | 4657335 - 4657850 | 18457.6 |
| duf736 domain-containing protein | SGRAN_RS21270 | Not Available | Positive | 4657886 - 4658221 | 12318.4 |
| lytic transglycosylase domain-containing protein | SGRAN_RS21275 | Not Available | Positive | 4658286 - 4658951 | 23762.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.