Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| strawberry notch-like ntp hydrolase domain-containing protein | SGRAN_RS21200 | Not Available | Positive | 4643255 - 4647607 | 157018.0 |
| toprim domain-containing protein | SGRAN_RS21205 | Not Available | Positive | 4647616 - 4648671 | 37980.5 |
| duf2493 domain-containing protein | SGRAN_RS21210 | Not Available | Positive | 4649000 - 4649941 | 35342.7 |
| hu family dna-binding protein | SGRAN_RS21215 | Not Available | Positive | 4650099 - 4650374 | 9395.18 |
| hypothetical protein | SGRAN_RS23100 | Not Available | Positive | 4650675 - 4650803 | 4869.9 |
| duf736 family protein | SGRAN_RS21225 | Not Available | Positive | 4651518 - 4651838 | 11493.5 |
| hypothetical protein | SGRAN_RS22745 | Not Available | Positive | 4651912 - 4652082 | 6281.47 |
| hypothetical protein | SGRAN_RS22750 | Not Available | Positive | 4652653 - 4652826 | 6309.61 |
| helix-turn-helix domain-containing protein | SGRAN_RS21230 | Not Available | Negative | 4652860 - 4653090 | 8558.2 |
| dna -binding domain-containing protein | SGRAN_RS21995 | Not Available | Positive | 4653246 - 4653524 | 10378.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.