Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c/ftr1 family iron permease | SGRAN_RS21060 | Not Available | Positive | 4608696 - 4610582 | 66668.5 |
| hypothetical protein | SGRAN_RS21065 | Not Available | Positive | 4610627 - 4610995 | 13988.9 |
| amidohydrolase | SGRAN_RS22440 | Not Available | Positive | 4611131 - 4611466 | 11492.8 |
| tolc family protein | SGRAN_RS21070 | Not Available | Positive | 4611529 - 4612836 | 45869.6 |
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS21075 | Not Available | Positive | 4613042 - 4614202 | 39671.2 |
| efflux rnd transporter permease subunit | SGRAN_RS21080 | Not Available | Positive | 4614206 - 4617451 | 115633.0 |
| duf190 domain-containing protein | SGRAN_RS21085 | Not Available | Positive | 4617463 - 4617807 | 12552.1 |
| srpbcc family protein | SGRAN_RS21090 | Not Available | Positive | 4617937 - 4618407 | 18206.0 |
| heavy metal translocating p-type atpase | SGRAN_RS21095 | Not Available | Positive | 4618613 - 4621102 | 88111.4 |
| tolc family outer membrane protein | SGRAN_RS21100 | Not Available | Positive | 4621099 - 4622610 | 53620.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.