Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf411 domain-containing protein | SGRAN_RS21010 | Not Available | Positive | 4596815 - 4597255 | 15398.7 |
| hypothetical protein | SGRAN_RS21015 | Not Available | Positive | 4597302 - 4597661 | 12343.5 |
| hypothetical protein | SGRAN_RS21020 | Not Available | Positive | 4597745 - 4598020 | 9815.7 |
| tolc family protein | SGRAN_RS21025 | Not Available | Positive | 4598154 - 4599380 | 43357.2 |
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS21030 | Not Available | Positive | 4599377 - 4600864 | 51880.4 |
| efflux rnd transporter permease subunit | SGRAN_RS21035 | Not Available | Positive | 4600861 - 4603989 | 112454.0 |
| copper-binding protein | SGRAN_RS21040 | Not Available | Positive | 4604001 - 4604366 | 12311.8 |
| dmt family transporter | SGRAN_RS21045 | Not Available | Positive | 4604421 - 4605497 | 37390.4 |
| cation-translocating p-type atpase | SGRAN_RS21050 | Not Available | Negative | 4605728 - 4608001 | 78919.1 |
| helix-turn-helix domain-containing protein | SGRAN_RS21055 | Not Available | Positive | 4608069 - 4608488 | 15334.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.