Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase family protein | SGRAN_RS20815 | Not Available | Negative | 4555032 - 4555667 | 23760.6 |
| duf488 family protein | SGRAN_RS20820 | Not Available | Negative | 4555723 - 4556277 | 20374.4 |
| duf2945 domain-containing protein | SGRAN_RS20825 | Not Available | Negative | 4556270 - 4556485 | 8024.33 |
| tonb-dependent receptor domain-containing protein | SGRAN_RS20830 | Not Available | Negative | 4556600 - 4558621 | 71995.3 |
| duf2946 family protein | SGRAN_RS20835 | Not Available | Negative | 4558690 - 4559079 | 12914.7 |
| tonb-dependent siderophore receptor | SGRAN_RS20840 | Not Available | Positive | 4559586 - 4561514 | 68615.0 |
| abc transporter substrate-binding protein | SGRAN_RS20845 | Not Available | Positive | 4561529 - 4562395 | 30037.5 |
| iron abc transporter permease | SGRAN_RS20850 | Not Available | Positive | 4562398 - 4563396 | 33925.6 |
| abc transporter atp-binding protein | SGRAN_RS20855 | Not Available | Positive | 4563390 - 4564166 | 26950.1 |
| cobyric acid synthase | SGRAN_RS20860 | Not Available | Positive | 4564163 - 4565617 | 50725.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.