Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthetic protein fliq | SGRAN_RS20615 | Not Available | Positive | 4515656 - 4515925 | 9528.04 |
| flagellar biosynthetic protein flir | SGRAN_RS20620 | Not Available | Positive | 4515933 - 4516712 | 25904.9 |
| flagellar type iii secretion system protein flhb | SGRAN_RS20625 | Not Available | Positive | 4516717 - 4517856 | 40432.6 |
| flagellar filament capping protein flid | SGRAN_RS20630 | Not Available | Positive | 4517920 - 4519296 | 47186.5 |
| flagellar protein flis | SGRAN_RS20635 | Not Available | Positive | 4519308 - 4519697 | 13922.6 |
| sigma-54-dependent fis family transcriptional regulator | SGRAN_RS20640 | Not Available | Negative | 4520078 - 4521142 | 38248.1 |
| flagellar motor protein motb | SGRAN_RS20645 | Not Available | Negative | 4521322 - 4522182 | 31782.0 |
| flagellar motor stator protein mota | SGRAN_RS20650 | Not Available | Negative | 4522182 - 4523045 | 30207.5 |
| flagellin | SGRAN_RS20655 | Not Available | Negative | 4523137 - 4523967 | 28358.4 |
| flagellar hook-associated protein flgk | SGRAN_RS20660 | Not Available | Negative | 4523984 - 4525312 | 44863.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.