Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar motor switch protein flig | SGRAN_RS20565 | Not Available | Positive | 4507960 - 4509000 | 37084.9 |
| flih/sctl family protein | SGRAN_RS20570 | Not Available | Positive | 4508993 - 4509604 | 21256.1 |
| flii/yscn family atpase | SGRAN_RS20575 | Not Available | Positive | 4509601 - 4510932 | 46993.0 |
| hypothetical protein | SGRAN_RS20580 | Not Available | Positive | 4510929 - 4511372 | 16420.9 |
| flagellar hook-length control protein flik | SGRAN_RS22430 | Not Available | Positive | 4511369 - 4512727 | 45095.4 |
| flagellar basal body-associated protein flil | SGRAN_RS20590 | Not Available | Positive | 4512748 - 4513359 | 21568.0 |
| flim/flin family flagellar motor switch protein | SGRAN_RS20595 | Not Available | Positive | 4513356 - 4514261 | 32121.8 |
| flagellar motor switch protein flin | SGRAN_RS20600 | Not Available | Positive | 4514254 - 4514589 | 11686.9 |
| flagellar biosynthetic protein flio | SGRAN_RS20605 | Not Available | Positive | 4514589 - 4514864 | 9907.46 |
| flagellar type iii secretion system pore protein flip | SGRAN_RS20610 | Not Available | Positive | 4514854 - 4515645 | 28198.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.