Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | SGRAN_RS20520 | Not Available | Positive | 4491852 - 4493033 | 41109.2 |
| multidrug efflux rnd transporter permease subunit | SGRAN_RS20525 | Not Available | Positive | 4493040 - 4496228 | 114144.0 |
| efflux transporter outer membrane subunit | SGRAN_RS20530 | Not Available | Positive | 4496225 - 4497628 | 48112.6 |
| imua family protein | SGRAN_RS23095 | Not Available | Positive | 4497925 - 4498707 | 26684.9 |
| dna polymerase y family protein | SGRAN_RS20535 | Not Available | Positive | 4498610 - 4500148 | 55792.1 |
| error-prone dna polymerase | SGRAN_RS20540 | Not Available | Positive | 4500145 - 4503390 | 120971.0 |
| flagellin | SGRAN_RS20545 | Not Available | Negative | 4503711 - 4504610 | 30756.8 |
| flagellin | SGRAN_RS20550 | Not Available | Negative | 4504810 - 4505718 | 31063.3 |
| flagellar hook-basal body complex protein flie | SGRAN_RS20555 | Not Available | Positive | 4505964 - 4506305 | 12262.5 |
| flagellar basal-body ms-ring/collar protein flif | SGRAN_RS20560 | Not Available | Positive | 4506309 - 4507967 | 58041.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.