Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| division plane positioning atpase mipz | SGRAN_RS01785 | Not Available | Positive | 365316 - 366125 | 30177.1 |
| phosphoglucomutase/phosphomannomutase pgmg | SGRAN_RS01790 | Not Available | Positive | 366150 - 367556 | 50223.4 |
| lps export abc transporter atp-binding protein | SGRAN_RS01795 | Not Available | Positive | 367787 - 368599 | 28820.8 |
| rna polymerase factor sigma-54 | SGRAN_RS01800 | Not Available | Positive | 368739 - 370196 | 51734.1 |
| type b 50s ribosomal protein l36 | SGRAN_RS01805 | Not Available | Positive | 370483 - 370608 | 5096.3 |
| had-ia family hydrolase | SGRAN_RS01810 | Not Available | Positive | 370703 - 371314 | 22312.4 |
| s9 family peptidase | SGRAN_RS01815 | Not Available | Negative | 371516 - 373681 | 79569.7 |
| aminopeptidase p family protein | SGRAN_RS01820 | Not Available | Positive | 373750 - 375576 | 64333.2 |
| thioesterase family protein | SGRAN_RS01825 | Not Available | Positive | 375584 - 376045 | 17624.6 |
| hypothetical protein | SGRAN_RS01830 | Not Available | Positive | 376379 - 376840 | 17647.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.