Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ammonium transporter | SGRAN_RS20320 | Not Available | Positive | 4449630 - 4450979 | 46047.6 |
| gmc family oxidoreductase | SGRAN_RS20325 | Not Available | Negative | 4451340 - 4452926 | 56590.1 |
| sterol desaturase family protein | SGRAN_RS20330 | Not Available | Negative | 4453031 - 4453945 | 35552.9 |
| hypothetical protein | SGRAN_RS20335 | Not Available | Negative | 4453938 - 4454420 | 16450.9 |
| tigr01244 family sulfur transferase | SGRAN_RS20340 | Not Available | Negative | 4454417 - 4454851 | 14803.3 |
| dna helicase recq | SGRAN_RS20345 | Not Available | Negative | 4455075 - 4456847 | 63736.6 |
| 3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing protein | SGRAN_RS20350 | Not Available | Negative | 4456856 - 4457722 | 29861.3 |
| l-histidine n(alpha)-methyltransferase | SGRAN_RS20355 | Not Available | Negative | 4457858 - 4458844 | 35243.0 |
| ergothioneine biosynthesis protein egtb | SGRAN_RS20360 | Not Available | Negative | 4458846 - 4460153 | 47673.5 |
| type ii toxin-antitoxin system vapc family toxin | SGRAN_RS20365 | Not Available | Negative | 4460300 - 4460701 | 14582.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.