Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fdhf/ydep family oxidoreductase | SGRAN_RS20225 | Not Available | Positive | 4431825 - 4434092 | 83437.1 |
| Trna-gln | Not Available | Not Available | Positive | 4434179 - 4434252 | Not Available |
| fad-dependent oxidoreductase | SGRAN_RS20235 | Not Available | Positive | 4434407 - 4435711 | 45986.9 |
| doxx family protein | SGRAN_RS20240 | Not Available | Positive | 4435711 - 4436133 | 15426.8 |
| dipeptidase | SGRAN_RS20245 | Not Available | Negative | 4436143 - 4437414 | 45162.1 |
| m20 family metallopeptidase | SGRAN_RS20250 | Not Available | Positive | 4437574 - 4438776 | 42371.2 |
| gxxexxy protein | SGRAN_RS20255 | Not Available | Positive | 4438837 - 4439205 | 13682.9 |
| l-aspartate oxidase | SGRAN_RS20260 | Not Available | Negative | 4439261 - 4440847 | 57738.8 |
| endonuclease domain-containing protein | SGRAN_RS21950 | Not Available | Negative | 4440844 - 4441293 | 16473.7 |
| abc transporter atp-binding protein | SGRAN_RS20265 | Not Available | Negative | 4441286 - 4442209 | 33664.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.