Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | SGRAN_RS20125 | Not Available | Positive | 4402054 - 4403559 | 53456.2 |
| single-stranded-dna-specific exonuclease recj | SGRAN_RS20130 | Not Available | Positive | 4403556 - 4405325 | 60996.5 |
| Trna-glu | Not Available | Not Available | Positive | 4405415 - 4405490 | Not Available |
| amidohydrolase | SGRAN_RS20140 | Not Available | Negative | 4405599 - 4406951 | 47512.1 |
| tetr/acrr family transcriptional regulator | SGRAN_RS20145 | Not Available | Negative | 4406993 - 4407664 | 24481.6 |
| tonb-dependent receptor domain-containing protein | SGRAN_RS20150 | Not Available | Positive | 4407868 - 4410771 | 101530.0 |
| lipase family protein | SGRAN_RS20155 | Not Available | Positive | 4410794 - 4411972 | 40032.2 |
| carboxylesterase/lipase family protein | SGRAN_RS20160 | Not Available | Negative | 4412033 - 4413670 | 58515.9 |
| hypothetical protein | SGRAN_RS20165 | Not Available | Positive | 4413783 - 4415090 | 44526.9 |
| glycoside hydrolase family 1 protein | SGRAN_RS20170 | Not Available | Negative | 4415292 - 4416620 | 48463.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.