Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | SGRAN_RS19740 | Not Available | Negative | 4296279 - 4296992 | 25609.5 |
| tonb-dependent receptor domain-containing protein | SGRAN_RS19745 | Not Available | Negative | 4297106 - 4300327 | 115736.0 |
| phosphoribosyl-atp diphosphatase | SGRAN_RS19750 | Not Available | Positive | 4300524 - 4300886 | 12313.5 |
| histidine triad nucleotide-binding protein | SGRAN_RS19755 | Not Available | Positive | 4300898 - 4301275 | 13519.2 |
| alpha-2-macroglobulin | SGRAN_RS19760 | Not Available | Positive | 4301808 - 4307636 | 207164.0 |
| penicillin-binding protein 1c | SGRAN_RS19765 | Not Available | Positive | 4307702 - 4309837 | 76661.0 |
| amino acid permease | SGRAN_RS19770 | Not Available | Positive | 4310008 - 4311537 | 53404.3 |
| multidrug effflux mfs transporter | SGRAN_RS19775 | Not Available | Negative | 4311632 - 4312816 | 41612.4 |
| hypothetical protein | SGRAN_RS19780 | Not Available | Negative | 4313025 - 4313327 | 10538.5 |
| pitrilysin family protein | SGRAN_RS19785 | Not Available | Negative | 4313353 - 4316238 | 102548.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.