Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrofolate reductase | SGRAN_RS19640 | Not Available | Positive | 4275348 - 4275842 | 18154.9 |
| dipeptidase | SGRAN_RS19645 | Not Available | Positive | 4275855 - 4277036 | 41991.0 |
| bifunctional riboflavin kinase/fad synthetase | SGRAN_RS19650 | Not Available | Positive | 4277152 - 4278081 | 33128.6 |
| isoleucine--trna ligase | SGRAN_RS19655 | Not Available | Positive | 4278369 - 4281278 | 109175.0 |
| signal peptidase ii | SGRAN_RS19660 | Not Available | Positive | 4281275 - 4281808 | 19040.3 |
| duf3035 domain-containing protein | SGRAN_RS19665 | Not Available | Positive | 4281836 - 4282255 | 14068.4 |
| duf6290 family protein | SGRAN_RS19670 | Not Available | Positive | 4282327 - 4282545 | 8080.7 |
| type ii toxin-antitoxin system rele/pare family toxin | SGRAN_RS19675 | Not Available | Positive | 4282529 - 4282798 | 10334.7 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SGRAN_RS19680 | Not Available | Negative | 4282817 - 4284745 | 68475.8 |
| hypothetical protein | SGRAN_RS22405 | Not Available | Negative | 4284806 - 4285054 | 8475.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.