Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lyttr family dna-binding domain-containing proteinSGRAN_RS19590Not AvailableNegative4266317 - 426712330298.4
sensor histidine kinaseSGRAN_RS19595Not AvailableNegative4267120 - 426824440991.4
helix-turn-helix domain-containing proteinSGRAN_RS19600Not AvailableNegative4268290 - 426881119602.8
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseSGRAN_RS19605Not AvailablePositive4268968 - 427106178104.0
dps family proteinSGRAN_RS19610Not AvailableNegative4271335 - 427179016783.7
hypothetical proteinSGRAN_RS19615Not AvailableNegative4271908 - 427245918361.9
hypothetical proteinSGRAN_RS19620Not AvailableNegative4272504 - 427283311414.6
ggdef domain-containing proteinSGRAN_RS19625Not AvailableNegative4272913 - 427355723628.3
5-(carboxyamino)imidazole ribonucleotide mutaseSGRAN_RS19630Not AvailablePositive4273738 - 427424716905.6
5-(carboxyamino)imidazole ribonucleotide synthaseSGRAN_RS19635Not AvailablePositive4274254 - 427535138145.5

Displaying genes 4031 – 4040 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.