Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | SGRAN_RS19540 | Not Available | Negative | 4255323 - 4255871 | 20898.9 |
| Trna-gly | Not Available | Not Available | Positive | 4256118 - 4256192 | Not Available |
| tetratricopeptide repeat protein | SGRAN_RS19550 | Not Available | Positive | 4256400 - 4257311 | 31830.9 |
| lon peptidase substrate-binding domain-containing protein | SGRAN_RS19555 | Not Available | Positive | 4257319 - 4257969 | 24174.9 |
| rna polymerase subunit sigma-70 | SGRAN_RS19560 | Not Available | Negative | 4258072 - 4258752 | 24129.7 |
| ubih/ubif/visc/coq6 family ubiquinone biosynthesis hydroxylase | SGRAN_RS19565 | Not Available | Negative | 4258910 - 4260139 | 43010.2 |
| dna translocase ftsk 4tm domain-containing protein | SGRAN_RS19570 | Not Available | Positive | 4260769 - 4263081 | 82867.6 |
| outer membrane lipoprotein carrier protein lola | SGRAN_RS19575 | Not Available | Positive | 4263328 - 4263984 | 23885.7 |
| exodeoxyribonuclease iii | SGRAN_RS19580 | Not Available | Positive | 4264388 - 4265173 | 29443.0 |
| gtp cyclohydrolase ii | SGRAN_RS19585 | Not Available | Positive | 4265170 - 4266234 | 36935.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.