Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent siderophore receptor | SGRAN_RS19435 | Not Available | Positive | 4231237 - 4233381 | 78811.7 |
| duf4424 family protein | SGRAN_RS19440 | Not Available | Negative | 4233375 - 4234376 | 36498.0 |
| hypothetical protein | SGRAN_RS19450 | Not Available | Positive | 4234609 - 4235298 | 24219.7 |
| ygcg family protein | SGRAN_RS19455 | Not Available | Positive | 4235321 - 4236286 | 34506.4 |
| hypothetical protein | SGRAN_RS19460 | Not Available | Positive | 4236283 - 4237170 | 32282.4 |
| arac family transcriptional regulator | SGRAN_RS22720 | Not Available | Negative | 4237296 - 4238255 | 34458.6 |
| hypothetical protein | SGRAN_RS22725 | Not Available | Positive | 4238607 - 4239425 | 28839.5 |
| lysozyme inhibitor lpri family protein | SGRAN_RS19475 | Not Available | Positive | 4239526 - 4240827 | 46788.3 |
| shoct domain-containing protein | SGRAN_RS19480 | Not Available | Positive | 4240824 - 4241498 | 23773.1 |
| hypothetical protein | SGRAN_RS19485 | Not Available | Positive | 4241495 - 4241926 | 15808.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.