Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l35 | SGRAN_RS01695 | Not Available | Negative | 349437 - 349640 | 7502.25 |
| gfa family protein | SGRAN_RS01700 | Not Available | Negative | 350013 - 350363 | 12388.8 |
| histidinol-phosphatase | SGRAN_RS01705 | Not Available | Negative | 350389 - 351171 | 27558.6 |
| ribose-phosphate pyrophosphokinase | SGRAN_RS01710 | Not Available | Negative | 351435 - 352370 | 33314.0 |
| nad+ synthase | SGRAN_RS01715 | Not Available | Positive | 352519 - 354180 | 60058.0 |
| glutamate--trna ligase | SGRAN_RS01720 | Not Available | Positive | 354316 - 355626 | 47420.6 |
| energy transducer tonb | SGRAN_RS01725 | Not Available | Positive | 355931 - 356665 | 25375.6 |
| 50s ribosomal protein l33 | SGRAN_RS01730 | Not Available | Positive | 357163 - 357330 | 6359.94 |
| hypothetical protein | SGRAN_RS22485 | Not Available | Positive | 357598 - 357753 | 5634.0 |
| sdr family oxidoreductase | SGRAN_RS01735 | Not Available | Positive | 357777 - 359057 | 44375.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.