Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SGRAN_RS09230 | Not Available | Negative | 2001302 - 2001817 | 18148.8 |
| Capsid maturation protease | SGRAN_RS09235 | Not Available | Negative | 2001814 - 2002422 | 22116.3 |
| Major capsid protein | SGRAN_RS09240 | Not Available | Negative | 2002422 - 2003687 | 43948.2 |
| Putative hnh homing endonuclease | SGRAN_RS21670 | Not Available | Negative | 2003698 - 2004009 | 11967.3 |
| Portal protein | SGRAN_RS09245 | Not Available | Negative | 2004006 - 2005517 | 54016.4 |
| hypothetical protein | SGRAN_RS09250 | Not Available | Negative | 2005828 - 2006199 | 13099.4 |
| hypothetical protein | SGRAN_RS22825 | Not Available | Negative | 2006670 - 2006912 | 8533.07 |
| hypothetical protein | SGRAN_RS09260 | Not Available | Negative | 2007209 - 2007733 | 19809.1 |
| helix-turn-helix domain-containing protein | SGRAN_RS21675 | Not Available | Negative | 2007908 - 2008090 | 6475.9 |
| Phage integrase family prophage lambdach01 | SGRAN_RS09265 | Not Available | Positive | 2008279 - 2009439 | 42559.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.