Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SGRAN_RS19235 | Not Available | Negative | 4190371 - 4190871 | 19027.8 |
| Trna-cys | Not Available | Not Available | Positive | 4190961 - 4191034 | Not Available |
| protein-l-isoaspartate o-methyltransferase | SGRAN_RS19245 | Not Available | Positive | 4191281 - 4191943 | 23010.2 |
| tolc family outer membrane protein | SGRAN_RS19250 | Not Available | Positive | 4191979 - 4193472 | 52287.1 |
| duf2497 domain-containing protein | SGRAN_RS19255 | Not Available | Positive | 4193638 - 4194069 | 14942.6 |
| duf885 family protein | SGRAN_RS19260 | Not Available | Negative | 4194127 - 4195941 | 67448.9 |
| peroxiredoxin | SGRAN_RS19265 | Not Available | Positive | 4196120 - 4196776 | 23832.3 |
| metalloregulator arsr/smtb family transcription factor | SGRAN_RS19270 | Not Available | Positive | 4196773 - 4197147 | 13404.4 |
| helix-turn-helix transcriptional regulator | SGRAN_RS19275 | Not Available | Negative | 4197567 - 4197881 | 11448.1 |
| copper resistance protein copc | SGRAN_RS19280 | Not Available | Negative | 4197878 - 4201083 | 114660.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.