Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vgr related protein | SGRAN_RS19185 | Not Available | Positive | 4175733 - 4176197 | 17867.8 |
| copper chaperone pcu(a)c | SGRAN_RS19190 | Not Available | Negative | 4176237 - 4176746 | 17540.2 |
| molecular chaperone dnak | SGRAN_RS19195 | Not Available | Positive | 4176900 - 4178816 | 68388.9 |
| molecular chaperone dnaj | SGRAN_RS19200 | Not Available | Positive | 4178937 - 4180055 | 40522.7 |
| patatin-like protein | SGRAN_RS19205 | Not Available | Negative | 4180086 - 4182401 | 84681.4 |
| tonb-dependent receptor | SGRAN_RS19210 | Not Available | Positive | 4182545 - 4184749 | 78136.9 |
| pepsy domain-containing protein | SGRAN_RS19215 | Not Available | Positive | 4184766 - 4185869 | 40424.8 |
| primosomal protein n' | SGRAN_RS19220 | Not Available | Positive | 4186099 - 4188267 | 77401.5 |
| lipopolysaccharide assembly protein lapb | SGRAN_RS19225 | Not Available | Positive | 4188346 - 4189941 | 59244.3 |
| hypothetical protein | SGRAN_RS19230 | Not Available | Negative | 4190006 - 4190314 | 10595.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.