Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein copc | SGRAN_RS23080 | Not Available | Negative | 4132414 - 4132650 | 9087.92 |
| nadh:ubiquinone oxidoreductase subunit ndufa12 | SGRAN_RS18980 | Not Available | Negative | 4132815 - 4133201 | 14162.5 |
| duf192 domain-containing protein | SGRAN_RS18985 | Not Available | Negative | 4133292 - 4133738 | 15752.1 |
| recx family transcriptional regulator | SGRAN_RS18990 | Not Available | Negative | 4133783 - 4134313 | 19095.7 |
| fatty acyl-amp ligase | SGRAN_RS18995 | Not Available | Positive | 4134537 - 4136297 | 63490.3 |
| bifunctional diguanylate cyclase/phosphodiesterase | SGRAN_RS19000 | Not Available | Positive | 4136403 - 4138757 | 85237.9 |
| chap domain-containing protein | SGRAN_RS19005 | Not Available | Positive | 4138948 - 4139514 | 20339.2 |
| duf3297 family protein | SGRAN_RS19010 | Not Available | Negative | 4139546 - 4139806 | 9792.29 |
| hemerythrin domain-containing protein | SGRAN_RS19015 | Not Available | Negative | 4139882 - 4140295 | 15785.9 |
| translational gtpase typa | SGRAN_RS19020 | Not Available | Negative | 4140391 - 4142238 | 66961.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.