Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4139 domain-containing proteinSGRAN_RS18730Not AvailableNegative4076245 - 407773552904.3
duf4139 domain-containing proteinSGRAN_RS18735Not AvailableNegative4077810 - 407922850898.2
duf4167 domain-containing proteinSGRAN_RS18740Not AvailableNegative4079304 - 408009229477.9
peptide chain release factor n(5)-glutamine methyltransferaseSGRAN_RS18745Not AvailableNegative4080350 - 408117729097.2
peptide chain release factor 1SGRAN_RS18750Not AvailableNegative4081295 - 408236238489.8
histidine--trna ligaseSGRAN_RS18755Not AvailableNegative4082362 - 408361545545.0
m61 family metallopeptidaseSGRAN_RS18760Not AvailablePositive4083710 - 408564771322.4
inorganic diphosphataseSGRAN_RS18765Not AvailablePositive4085753 - 408628919667.7
mechanosensitive ion channel family proteinSGRAN_RS18770Not AvailableNegative4086310 - 408723033271.0
cystathionine beta-lyaseSGRAN_RS18775Not AvailableNegative4087227 - 408843243062.5

Displaying genes 3861 – 3870 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.