Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family efflux transporter periplasmic adaptor subunit | SGRAN_RS18630 | Not Available | Negative | 4057886 - 4059043 | 40307.0 |
| efflux transporter outer membrane subunit | SGRAN_RS18635 | Not Available | Negative | 4059040 - 4060461 | 48628.5 |
| tetr/acrr family transcriptional regulator | SGRAN_RS18640 | Not Available | Positive | 4060514 - 4061230 | 26249.4 |
| hypothetical protein | SGRAN_RS18645 | Not Available | Positive | 4061255 - 4061434 | 6716.9 |
| helix-turn-helix domain-containing protein | SGRAN_RS18650 | Not Available | Negative | 4061444 - 4062154 | 24842.0 |
| is3 family transposase | SGRAN_RS18655 | Not Available | Negative | 4062819 - 4063948 | 43104.8 |
| is21-like element helper atpase istb | SGRAN_RS18665 | Not Available | Negative | 4064055 - 4064891 | 31164.7 |
| is21 family transposase | SGRAN_RS18670 | Not Available | Negative | 4064888 - 4066357 | 55147.6 |
| copper resistance protein copc | SGRAN_RS18675 | Not Available | Positive | 4066648 - 4067397 | 27872.0 |
| hypothetical protein | SGRAN_RS22860 | Not Available | Positive | 4067426 - 4067656 | 8740.37 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.