Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l30SGRAN_RS01595Not AvailablePositive327780 - 3279656963.84
duf1737 domain-containing proteinSGRAN_RS01600Not AvailablePositive327973 - 3281797422.81
50s ribosomal protein l15SGRAN_RS01605Not AvailablePositive328234 - 32871916629.3
preprotein translocase subunit secySGRAN_RS01610Not AvailablePositive328947 - 33032049070.8
adenylate kinaseSGRAN_RS01615Not AvailablePositive330371 - 33102423168.6
hypothetical proteinSGRAN_RS01620Not AvailableNegative331203 - 33152311418.2
duf4142 domain-containing proteinSGRAN_RS01625Not AvailableNegative331520 - 33204718168.5
gtp cyclohydrolase i foleSGRAN_RS01630Not AvailablePositive332196 - 33282222300.8
rna polymerase sigma factorSGRAN_RS01635Not AvailablePositive332819 - 33350525354.5
hypothetical proteinSGRAN_RS01640Not AvailablePositive333556 - 33428125550.2

Displaying genes 371 – 380 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.