Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur cluster assembly scaffold protein | SGRAN_RS18285 | Not Available | Negative | 3985265 - 3985690 | 14277.0 |
| cvpa family protein | SGRAN_RS18290 | Not Available | Negative | 3985687 - 3986262 | 19539.8 |
| dna repair protein rada | SGRAN_RS18295 | Not Available | Negative | 3986405 - 3987766 | 47432.1 |
| fructose-6-phosphate aldolase | SGRAN_RS18300 | Not Available | Positive | 3987977 - 3988627 | 23052.0 |
| enoyl-coa hydratase-related protein | SGRAN_RS18305 | Not Available | Positive | 3988996 - 3989799 | 27923.6 |
| acetyl-coa acetyltransferase | SGRAN_RS18310 | Not Available | Positive | 3989801 - 3991303 | 53741.6 |
| aldehyde dehydrogenase family protein | SGRAN_RS18315 | Not Available | Negative | 3991334 - 3992833 | 52128.4 |
| acetate--coa ligase | SGRAN_RS18320 | Not Available | Positive | 3993036 - 3995000 | 71738.1 |
| peptidase | SGRAN_RS18325 | Not Available | Negative | 3995056 - 3995787 | 26932.3 |
| preprotein translocase subunit seca | SGRAN_RS18330 | Not Available | Negative | 3995843 - 3998578 | 102096.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.