Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate decarboxylaseSGRAN_RS17755Not AvailableNegative3870605 - 387186444624.4
hypothetical proteinSGRAN_RS17760Not AvailableNegative3872008 - 38722718926.65
argininosuccinate lyaseSGRAN_RS17765Not AvailableNegative3872273 - 387364347915.1
tlpa disulfide reductase family proteinSGRAN_RS17770Not AvailablePositive3873702 - 387426819503.2
nad(p)h-dependent glycerol-3-phosphate dehydrogenaseSGRAN_RS17775Not AvailableNegative3874302 - 387530334933.8
alpha/beta fold hydrolaseSGRAN_RS17780Not AvailableNegative3875347 - 387627934331.6
alpha/beta hydrolaseSGRAN_RS17785Not AvailableNegative3876319 - 387716129638.6
duf3336 domain-containing proteinSGRAN_RS17790Not AvailableNegative3877163 - 387861153364.9
ws/dgat domain-containing proteinSGRAN_RS17795Not AvailableNegative3878629 - 387984042192.3
copper resistance protein copcSGRAN_RS23075Not AvailableNegative3879968 - 38801808251.95

Displaying genes 3661 – 3670 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.