Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chase domain-containing protein | SGRAN_RS17510 | Not Available | Positive | 3813828 - 3815453 | 59412.4 |
| hydantoinase b/oxoprolinase family protein | SGRAN_RS17515 | Not Available | Positive | 3815446 - 3819066 | 126013.0 |
| duf969 domain-containing protein | SGRAN_RS17520 | Not Available | Positive | 3819128 - 3819802 | 23945.8 |
| duf979 domain-containing protein | SGRAN_RS17525 | Not Available | Positive | 3819799 - 3820737 | 31927.4 |
| duf2891 domain-containing protein | SGRAN_RS17530 | Not Available | Positive | 3820751 - 3821761 | 36856.7 |
| ggdef domain-containing protein | SGRAN_RS17535 | Not Available | Positive | 3821854 - 3823038 | 41754.3 |
| aconitate hydratase acna | SGRAN_RS17540 | Not Available | Positive | 3823561 - 3826236 | 96008.1 |
| ribosomal protein l7/l12 | SGRAN_RS17545 | Not Available | Positive | 3826267 - 3826578 | 11087.6 |
| amidohydrolase family protein | SGRAN_RS17550 | Not Available | Negative | 3826755 - 3828215 | 51885.0 |
| Trna-val | Not Available | Not Available | Positive | 3828284 - 3828359 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.