Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | SGRAN_RS17270 | Not Available | Positive | 3753201 - 3754139 | 33724.0 |
| m20/m25/m40 family metallo-hydrolase | SGRAN_RS17275 | Not Available | Positive | 3754228 - 3755763 | 55049.9 |
| voc family protein | SGRAN_RS17280 | Not Available | Positive | 3755774 - 3756229 | 16706.8 |
| ydiy family protein | SGRAN_RS17285 | Not Available | Negative | 3756239 - 3757270 | 36947.8 |
| hypothetical protein | SGRAN_RS17290 | Not Available | Positive | 3757305 - 3757487 | 6627.88 |
| hypothetical protein | SGRAN_RS17295 | Not Available | Positive | 3757536 - 3757814 | 10381.0 |
| mbl fold metallo-hydrolase | SGRAN_RS17300 | Not Available | Negative | 3758158 - 3759294 | 41421.2 |
| duf1013 domain-containing protein | SGRAN_RS17305 | Not Available | Negative | 3759412 - 3760077 | 24215.5 |
| spor domain-containing protein | SGRAN_RS17310 | Not Available | Negative | 3760247 - 3761638 | 48214.7 |
| hypothetical protein | SGRAN_RS17315 | Not Available | Negative | 3761665 - 3762315 | 23201.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.