Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class a beta-lactamase | SGRAN_RS17220 | Not Available | Negative | 3741635 - 3742780 | 40009.2 |
| pyridoxal phosphate-dependent aminotransferase | SGRAN_RS17225 | Not Available | Negative | 3743273 - 3744484 | 42957.3 |
| aminodeoxychorismate synthase component i | SGRAN_RS17230 | Not Available | Negative | 3744618 - 3746447 | 64780.6 |
| hypothetical protein | SGRAN_RS17235 | Not Available | Negative | 3746479 - 3747024 | 19436.3 |
| long-chain fatty acid--coa ligase | SGRAN_RS17240 | Not Available | Positive | 3747153 - 3748820 | 59649.3 |
| merc domain-containing protein | SGRAN_RS17245 | Not Available | Positive | 3749011 - 3749442 | 14715.3 |
| fur family transcriptional regulator | SGRAN_RS17250 | Not Available | Positive | 3749527 - 3749991 | 16679.8 |
| fumarate hydratase | SGRAN_RS17255 | Not Available | Positive | 3750347 - 3751870 | 54809.4 |
| mbl fold metallo-hydrolase | SGRAN_RS17260 | Not Available | Negative | 3751903 - 3752766 | 29920.0 |
| cupin domain-containing protein | SGRAN_RS22365 | Not Available | Negative | 3752763 - 3753080 | 11604.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.