Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | SGRAN_RS17020 | Not Available | Negative | 3699418 - 3700266 | 29611.3 |
| polyribonucleotide nucleotidyltransferase | SGRAN_RS17025 | Not Available | Negative | 3700686 - 3703001 | 83488.6 |
| 30s ribosomal protein s15 | SGRAN_RS17030 | Not Available | Negative | 3703193 - 3703462 | 10428.7 |
| trna pseudouridine(55) synthase trub | SGRAN_RS17035 | Not Available | Negative | 3703488 - 3704444 | 33659.6 |
| duf6491 family protein | SGRAN_RS17040 | Not Available | Negative | 3704500 - 3704889 | 13821.5 |
| gnat family n-acetyltransferase | SGRAN_RS17045 | Not Available | Negative | 3705055 - 3705591 | 19697.6 |
| thymidine kinase | SGRAN_RS17050 | Not Available | Negative | 3705584 - 3706192 | 22279.7 |
| rrf2 family transcriptional regulator | SGRAN_RS17055 | Not Available | Negative | 3706233 - 3706664 | 14988.2 |
| group iii truncated hemoglobin | SGRAN_RS17060 | Not Available | Positive | 3706761 - 3707252 | 18264.1 |
| hypothetical protein | SGRAN_RS22670 | Not Available | Positive | 3707233 - 3707658 | 15200.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.