Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent succinate-semialdehyde dehydrogenase | SGRAN_RS16820 | Not Available | Negative | 3662463 - 3663905 | 50896.3 |
| tigr02466 family protein | SGRAN_RS16825 | Not Available | Negative | 3664066 - 3664665 | 22306.4 |
| smp-30/gluconolactonase/lre family protein | SGRAN_RS16830 | Not Available | Positive | 3664712 - 3665632 | 32808.9 |
| vit family protein | SGRAN_RS16835 | Not Available | Positive | 3665650 - 3666333 | 23035.6 |
| duf488 domain-containing protein | SGRAN_RS16840 | Not Available | Negative | 3666356 - 3666739 | 13724.1 |
| duf2855 family protein | SGRAN_RS16845 | Not Available | Positive | 3666793 - 3667896 | 39437.5 |
| had-ia family hydrolase | SGRAN_RS16850 | Not Available | Positive | 3668131 - 3668781 | 23088.7 |
| universal stress protein | SGRAN_RS16855 | Not Available | Negative | 3668925 - 3669737 | 28501.2 |
| lysr family transcriptional regulator | SGRAN_RS16860 | Not Available | Negative | 3669795 - 3670697 | 31940.2 |
| coa transferase subunit a | SGRAN_RS16865 | Not Available | Positive | 3670786 - 3671508 | 25875.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.