Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pirin family protein | SGRAN_RS16720 | Not Available | Positive | 3644885 - 3645592 | 25474.6 |
| nad(p)h:quinone oxidoreductase | SGRAN_RS16725 | Not Available | Positive | 3645704 - 3646306 | 20746.5 |
| class iii extradiol ring-cleavage dioxygenase | SGRAN_RS16730 | Not Available | Positive | 3646311 - 3647126 | 28974.6 |
| rlua family pseudouridine synthase | SGRAN_RS16735 | Not Available | Positive | 3647174 - 3647857 | 24853.9 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | SGRAN_RS16740 | Not Available | Positive | 3647850 - 3648251 | 14477.5 |
| sos response-associated peptidase family protein | SGRAN_RS16745 | Not Available | Positive | 3648261 - 3648845 | 21115.2 |
| pilz domain-containing protein | SGRAN_RS16750 | Not Available | Positive | 3648936 - 3649247 | 11577.7 |
| eve domain-containing protein | SGRAN_RS16755 | Not Available | Negative | 3649263 - 3649688 | 15727.9 |
| isopenicillin n synthase family oxygenase | SGRAN_RS16760 | Not Available | Positive | 3649829 - 3650758 | 33847.3 |
| ribose-phosphate pyrophosphokinase | SGRAN_RS16765 | Not Available | Negative | 3651047 - 3651460 | 14734.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.