Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit alpha | SGRAN_RS16670 | Not Available | Positive | 3634126 - 3635184 | 38406.2 |
| 50s ribosomal protein l17 | SGRAN_RS16675 | Not Available | Positive | 3635460 - 3635879 | 15609.9 |
| prolyl oligopeptidase family protein | SGRAN_RS16680 | Not Available | Positive | 3636488 - 3638632 | 77547.3 |
| gaf domain-containing protein | SGRAN_RS16685 | Not Available | Positive | 3638659 - 3639147 | 16835.2 |
| glycine zipper 2tm domain-containing protein | SGRAN_RS16690 | Not Available | Positive | 3639262 - 3640104 | 29604.6 |
| hypothetical protein | SGRAN_RS16695 | Not Available | Positive | 3640232 - 3640777 | 19384.2 |
| hypothetical protein | SGRAN_RS16700 | Not Available | Positive | 3641012 - 3641545 | 19749.3 |
| pilz domain-containing protein | SGRAN_RS16705 | Not Available | Positive | 3641722 - 3642153 | 15737.1 |
| response regulator transcription factor ctra | SGRAN_RS16710 | Not Available | Negative | 3642969 - 3643676 | 26493.2 |
| lysr family transcriptional regulator | SGRAN_RS16715 | Not Available | Negative | 3643816 - 3644742 | 31993.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.