Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family nad(p)-dependent oxidoreductaseSGRAN_RS16530Not AvailableNegative3602264 - 360300725892.2
type iv toxin-antitoxin system abiei family antitoxin domain-containing proteinSGRAN_RS23070Not AvailableNegative3603083 - 360337310808.0
hypothetical proteinSGRAN_RS16535Not AvailableNegative3603425 - 360371210202.0
cold-shock proteinSGRAN_RS16540Not AvailablePositive3604135 - 36043417397.66
translation initiation factor if-1SGRAN_RS16545Not AvailablePositive3604345 - 36046029618.72
hypothetical proteinSGRAN_RS22665Not AvailablePositive3604628 - 36047685175.48
hypothetical proteinSGRAN_RS16550Not AvailablePositive3604791 - 36050007638.08
nad-dependent succinate-semialdehyde dehydrogenaseSGRAN_RS16555Not AvailableNegative3605047 - 360651351227.6
4-aminobutyrate--2-oxoglutarate transaminaseSGRAN_RS16560Not AvailableNegative3606510 - 360779044483.0
mfs transporterSGRAN_RS16565Not AvailableNegative3607814 - 360898939835.0

Displaying genes 3411 – 3420 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.