Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-homoserine-lactone synthase | SGRAN_RS16235 | Not Available | Negative | 3539913 - 3540527 | 22041.6 |
| luxr family transcriptional regulator | SGRAN_RS16240 | Not Available | Negative | 3540618 - 3541352 | 27178.4 |
| hypothetical protein | SGRAN_RS16245 | Not Available | Positive | 3541927 - 3542160 | 7551.78 |
| aaa family atpase | SGRAN_RS16250 | Not Available | Positive | 3542157 - 3544619 | 88930.4 |
| hypothetical protein | SGRAN_RS16255 | Not Available | Negative | 3544627 - 3545271 | 23864.4 |
| duf2493 domain-containing protein | SGRAN_RS16260 | Not Available | Negative | 3545352 - 3546281 | 34943.4 |
| toprim domain-containing protein | SGRAN_RS16265 | Not Available | Negative | 3546600 - 3547634 | 36626.9 |
| hypothetical protein | SGRAN_RS22660 | Not Available | Positive | 3547569 - 3547730 | 5434.4 |
| parb/repb/spo0j family partition protein | SGRAN_RS16270 | Not Available | Negative | 3547829 - 3549955 | 76348.9 |
| hypothetical protein | SGRAN_RS16275 | Not Available | Negative | 3550077 - 3551270 | 43809.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.