Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | SGRAN_RS16195 | Not Available | Positive | 3529142 - 3529723 | 21505.5 |
| fecr family protein | SGRAN_RS16200 | Not Available | Positive | 3529720 - 3530625 | 32067.5 |
| tonb-dependent receptor | SGRAN_RS16205 | Not Available | Positive | 3530707 - 3533652 | 104846.0 |
| atxe2 family lasso peptide isopeptidase | SGRAN_RS16210 | Not Available | Positive | 3533646 - 3535634 | 71751.5 |
| asparagine synthetase b family protein | SGRAN_RS21915 | Not Available | Negative | 3535541 - 3537238 | 61259.9 |
| lasso peptide biosynthesis b2 protein | SGRAN_RS16220 | Not Available | Negative | 3537238 - 3537888 | 23495.5 |
| hypothetical protein | SGRAN_RS23190 | Not Available | Negative | 3537945 - 3538070 | 4333.96 |
| hypothetical protein | SGRAN_RS23195 | Not Available | Negative | 3538139 - 3538261 | 4236.79 |
| gntr family transcriptional regulator | SGRAN_RS16225 | Not Available | Negative | 3538359 - 3538982 | 22896.5 |
| phytanoyl-coa dioxygenase family protein | SGRAN_RS16230 | Not Available | Negative | 3538979 - 3539902 | 33188.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.