Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein copc | SGRAN_RS22350 | Not Available | Positive | 3519071 - 3520244 | 42461.9 |
| copper resistance protein copc | SGRAN_RS22355 | Not Available | Negative | 3520305 - 3520496 | 7522.0 |
| duf736 family protein | SGRAN_RS16155 | Not Available | Negative | 3520594 - 3520917 | 11531.8 |
| hypothetical protein | SGRAN_RS16160 | Not Available | Positive | 3521254 - 3522939 | 61797.4 |
| hypothetical protein | SGRAN_RS16165 | Not Available | Positive | 3522936 - 3524741 | 67730.5 |
| is66-like element accessory protein tnpa | SGRAN_RS16170 | Not Available | Positive | 3524890 - 3525246 | 12272.7 |
| is66 family insertion sequence element accessory protein tnpb | SGRAN_RS16175 | Not Available | Positive | 3525243 - 3525590 | 12815.9 |
| is66 family transposase | SGRAN_RS16180 | Not Available | Positive | 3525644 - 3527185 | 56901.8 |
| plasmid pria4b orf-3 family protein | SGRAN_RS16185 | Not Available | Positive | 3527182 - 3527793 | 23206.6 |
| phosphoribosyltransferase family protein | SGRAN_RS16190 | Not Available | Negative | 3528075 - 3528791 | 25635.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.