Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imua family protein | SGRAN_RS16095 | Not Available | Negative | 3511767 - 3512543 | 26784.0 |
| duf1810 domain-containing protein | SGRAN_RS16100 | Not Available | Negative | 3512634 - 3513065 | 15939.9 |
| sos response-associated peptidase family protein | SGRAN_RS16105 | Not Available | Negative | 3513062 - 3513679 | 23209.6 |
| sos response-associated peptidase family protein | SGRAN_RS16110 | Not Available | Positive | 3513735 - 3514247 | 19267.0 |
| alpha-ketoglutarate-dependent dioxygenase alkb | SGRAN_RS16115 | Not Available | Positive | 3514244 - 3514834 | 22075.2 |
| endonuclease | SGRAN_RS16120 | Not Available | Positive | 3514898 - 3515806 | 32549.8 |
| hypothetical protein | SGRAN_RS16125 | Not Available | Positive | 3516294 - 3517106 | 29471.2 |
| duf5677 domain-containing protein | SGRAN_RS16130 | Not Available | Positive | 3517364 - 3518047 | 26000.5 |
| hypothetical protein | SGRAN_RS22655 | Not Available | Negative | 3518092 - 3518262 | 5982.02 |
| copper resistance protein copc | SGRAN_RS16135 | Not Available | Negative | 3518264 - 3519010 | 28641.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.