Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-type conjugative transfer atpase trbb | SGRAN_RS15995 | Not Available | Negative | 3493009 - 3493992 | 34326.9 |
| helix-turn-helix transcriptional regulator | SGRAN_RS16000 | Not Available | Positive | 3494212 - 3494730 | 19198.9 |
| hypothetical protein | SGRAN_RS16005 | Not Available | Positive | 3494792 - 3495124 | 11483.7 |
| hypothetical protein | SGRAN_RS22640 | Not Available | Positive | 3495166 - 3495639 | 17184.3 |
| jab domain-containing protein | SGRAN_RS22645 | Not Available | Positive | 3495591 - 3496124 | 19348.2 |
| is3 family transposase | SGRAN_RS16020 | Not Available | Negative | 3496160 - 3497529 | 52776.0 |
| duf2840 domain-containing protein | SGRAN_RS16030 | Not Available | Negative | 3497569 - 3498084 | 18951.6 |
| alpa family transcriptional regulator | SGRAN_RS16035 | Not Available | Negative | 3498084 - 3498335 | 9113.02 |
| duf2285 domain-containing protein | SGRAN_RS16040 | Not Available | Negative | 3498453 - 3498899 | 16533.1 |
| transcriptional regulator domain-containing protein | SGRAN_RS16045 | Not Available | Negative | 3499024 - 3499233 | 8039.54 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.